Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs3829012 chr8:144664656 C/T 7.8E-5 490 30.77 32.23 33.58 KM Plot
PRAD rs3836867 chr5:154256584 ATAT/A 0 494 29.8 36.53 4.87 KM Plot
PRAD rs3837737 chr15:68017574 C/CT 5.98E-5 493 33.47 27.67 28.8 KM Plot
PRAD rs3847829 chr12:52840301 G/A 0.000134 491 29.2 36.33 22.93 KM Plot
PRAD rs3858628 chr12:52835426 G/A 0.00015 492 29.4 35.67 22.93 KM Plot
PRAD rs3859419 chr19:45493133 T/G 5.28E-5 484 45.2 30.77 30.8 KM Plot
PRAD rs3861723 chr13:113910926 A/G 2.04E-5 494 31.93 31.12 27.37 KM Plot
PRAD rs3890988 chr16:5006210 G/A 0.000148 484 31.27 29.95 26.37 KM Plot
PRAD rs3897352 chr1:16347854 C/A 2.36E-5 492 31.63 26.05 67.52 KM Plot
PRAD rs3904666 chr1:93704810 G/A 3.59E-6 494 31.37 26.8 18.97 KM Plot
PRAD rs3948545 chr5:171729453 G/A 1.29E-5 489 29.95 33.47 28.43 KM Plot
PRAD rs3960393 chr17:62983456 C/T 1.2E-8 482 30.8 31.62 19.63 KM Plot
PRAD rs4069793 chr9:72855898 G/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs4106950 chr15:84791946 T/G 0.00015 488 31.25 29.97 44.3 KM Plot
PRAD rs41270716 chr1:167511595 A/T 0.00013 494 30.93 30.9 15.77 KM Plot